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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12242 and 12243 are separated by 318 nucleotides
12243 and 12244 are separated by 425 nucleotides
12244 and 12245 are separated by 417 nucleotides
12245 and 12246 are separated by 1014 nucleotides
mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801,011 to 802,122
12242
mRNA_3875: 12243 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 802,441 to 804,314
12243
mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816
12244
mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789
12245
mRNA_3878: 12246 - K07975 K07975 Rho family, other, at 809,804 to 811,045
12246
Group
Condition
mRNA
_3874
mRNA
_3875
mRNA
_3876
mRNA
_3877
mRNA
_3878
12242
12243
12244
12245
12246
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.3
-1.3
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
-0.2
N.D.
-0.7
growth on ypd
YPD
-0.2
-0.0
-0.9
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.0
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
-0.7
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.3
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
-0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
+0.5
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.5
-0.3
N.D.
+0.3
auxotrophy
Dropout Complete
-0.2
+0.5
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.2
-0.3
N.D.
+0.7
auxotrophy
YNB Glucose
-0.2
+0.6
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
+0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.5
+0.4
N.D.
+0.4
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