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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12243 and 12244 are separated by 425 nucleotides
12244 and 12245 are separated by 417 nucleotides
12245 and 12246 are separated by 1014 nucleotides
12246 and 12247 are separated by 128 nucleotides
mRNA_3875: 12243 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 802,441 to 804,314
12243
mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816
12244
mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789
12245
mRNA_3878: 12246 - K07975 K07975 Rho family, other, at 809,804 to 811,045
12246
mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811,174 to 811,650
12247
Group
Condition
mRNA
_3875
mRNA
_3876
mRNA
_3877
mRNA
_3878
mRNA
_3879
12243
12244
12245
12246
12247
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.3
N.D.
-0.0
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
N.D.
-0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.4
N.D.
+0.1
+0.0
growth on ypd
YPD
-0.0
-0.9
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.6
N.D.
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
N.D.
+0.1
-0.3
growth on oleic acid
YNB Glucose
+0.0
+0.0
N.D.
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
N.D.
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
N.D.
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.4
N.D.
+0.4
-0.7
auxotrophy
YNB Glucose
+0.6
-0.3
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.7
N.D.
+0.1
+1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.5
N.D.
+0.3
+0.7
auxotrophy
Dropout Complete
+0.5
-0.0
N.D.
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
+0.1
+0.4
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