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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12244 and 12245 are separated by 417 nucleotides
12245 and 12246 are separated by 1014 nucleotides
12246 and 12247 are separated by 128 nucleotides
12247 and 12248 are separated by 566 nucleotides
mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816
12244
mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789
12245
mRNA_3878: 12246 - K07975 K07975 Rho family, other, at 809,804 to 811,045
12246
mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811,174 to 811,650
12247
mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812,217 to 813,988
12248
Group
Condition
mRNA
_3876
mRNA
_3877
mRNA
_3878
mRNA
_3879
mRNA
_3880
12244
12245
12246
12247
12248
auxotrophy
YNB Glucose
-0.3
N.D.
+0.2
+0.2
-4.0
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.3
+0.1
-3.4
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.2
+0.2
-3.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.7
-0.2
-1.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
+0.2
-0.0
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
+0.4
-2.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
-0.3
-2.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
-0.0
-0.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-0.1
-0.3
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.4
-0.7
-1.7
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
+0.3
+0.7
-2.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.3
-0.4
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.1
+0.3
-1.5
auxotrophy
YNB Glucose 75mM Arginine
-0.7
N.D.
+0.1
+1.1
-1.6
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
+0.3
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
+0.1
+0.0
-0.5
growth on ypd
YPD
-0.9
N.D.
+0.3
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.3
+0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
+0.2
-0.4
auxotrophy
Dropout Complete
-0.0
N.D.
-0.2
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.7
-0.1
+0.2
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