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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12248 and 12249 are separated by 379 nucleotides
12249 and 12250 are separated by 337 nucleotides
12250 and 12251 are separated by 702 nucleotides
12251 and 12252 are separated by 134 nucleotides
mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812,217 to 813,988
12248
mRNA_3881: 12249 - Hypothetical Protein, at 814,368 to 814,862
12249
mRNA_3882: 12250 - Hypothetical Protein, at 815,200 to 816,864
12250
mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817,567 to 820,111
12251
mRNA_3884: 12252 - Hypothetical Protein, at 820,246 to 821,511
12252
Group
Condition
mRNA
_3880
mRNA
_3881
mRNA
_3882
mRNA
_3883
mRNA
_3884
12248
12249
12250
12251
12252
auxotrophy
YNB Glucose
-4.0
-0.0
+0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-3.3
-0.2
+0.2
-0.1
-0.2
growth on oleic acid
YNB Glucose
-3.4
-0.3
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.9
+0.0
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
-0.3
-0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
-0.4
-0.1
-0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
+0.4
+0.3
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-2.0
-0.1
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.7
+0.1
-0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-1.0
-0.3
-0.3
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
+0.3
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.6
+0.1
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.7
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
+0.4
-0.3
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
+0.5
+0.5
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.0
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.2
-0.3
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.0
-0.2
+0.1
+0.1
growth on ypd
YPD
-0.2
-0.3
-0.1
-0.0
+0.1
auxotrophy
Dropout Complete
-0.2
-0.0
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.5
-0.2
-0.2
+0.3
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