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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12251 and 12252 are separated by 134 nucleotides
12252 and 12253 are separated by 1275 nucleotides
12253 and 12254 are separated by 264 nucleotides
12254 and 12255 are separated by 467 nucleotides
mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817,567 to 820,111
12251
mRNA_3884: 12252 - Hypothetical Protein, at 820,246 to 821,511
12252
mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822,787 to 823,648
12253
mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823,913 to 825,750
12254
mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826,218 to 829,062
12255
Group
Condition
mRNA
_3883
mRNA
_3884
mRNA
_3885
mRNA
_3886
mRNA
_3887
12251
12252
12253
12254
12255
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.3
-1.2
-0.7
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
-0.3
-0.4
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
-0.3
-0.4
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.8
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
+0.0
-0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.5
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
-0.9
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.5
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.9
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.5
-0.3
-0.1
auxotrophy
YNB Glucose
+0.0
+0.0
-0.4
-0.4
+0.0
auxotrophy
Dropout Complete
-0.1
+0.1
-0.4
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.3
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.0
-0.1
-0.2
growth on ypd
YPD
-0.0
+0.1
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.0
+0.6
-0.4
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