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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12253 and 12254 are separated by 264 nucleotides
12254 and 12255 are separated by 467 nucleotides
12255 and 12256 are separated by 337 nucleotides
12256 and 12257 are separated by 210 nucleotides
mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822,787 to 823,648
12253
mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823,913 to 825,750
12254
mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826,218 to 829,062
12255
mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829,400 to 831,173
12256
mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831,384 to 832,562
12257
Group
Condition
mRNA
_3885
mRNA
_3886
mRNA
_3887
mRNA
_3888
mRNA
_3889
12253
12254
12255
12256
12257
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.7
-0.2
+0.1
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
-0.5
-0.1
-1.4
growth on ricinoleic acid
YNB Glucose
-0.5
-0.5
-0.1
-0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.7
+0.3
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
-0.4
-0.1
-1.0
growth on oleic acid
YNB Glucose
-0.8
-0.2
-0.4
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.4
-0.3
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.1
-0.2
-0.0
auxotrophy
YNB Glucose
-0.4
-0.4
+0.0
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.2
+0.4
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.3
-0.1
+0.2
-0.2
auxotrophy
Dropout Complete
-0.4
-0.3
-0.0
+0.1
-0.1
growth on ypd
YPD
-0.2
+0.1
+0.2
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
-0.4
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.2
-0.2
+0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.6
-0.4
-0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.3
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
+0.1
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
-0.1
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.2
+0.4
+0.4
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