Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12255 and 12256 are separated by 337 nucleotides12256 and 12257 are separated by 210 nucleotides12257 and 12258 are separated by 412 nucleotides12258 and 12259 are separated by 215 nucleotides mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826,218 to 829,062 12255 mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829,400 to 831,173 12256 mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831,384 to 832,562 12257 mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832,975 to 835,014 12258 mRNA_3891: 12259 - K07889 RAB5C Ras-related protein Rab-5C, at 835,230 to 836,530 12259
Group Condition mRNA_3887 mRNA_3888 mRNA_3889 mRNA_3890 mRNA_3891
12255 12256 12257 12258 12259
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 -0.1 -1.4 +0.8 -2.1
facs on lipid accumulation Sorted High BODIPY Gate -0.7 +0.3 -1.1 +0.0 -1.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.1 -0.8 +0.0 -0.9
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.1 -1.0 +1.1 -1.3
growth on oleic acid YNB Glucose -0.4 -0.3 -0.0 +0.5 -1.3
growth on ypd YPD +0.2 +0.1 -1.1 -0.0 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.2 -0.0 -0.3 -0.5
growth on ricinoleic acid YNB Glucose -0.1 -0.1 -1.0 +0.7 -0.5
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.1 -0.4 -0.1 -0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 +0.0 +0.0 +0.1 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.0 -0.0 -0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine -0.3 -0.3 +0.0 +0.9 -0.7
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.3 -0.6 -0.5 +1.5
auxotrophy YNB Glucose +0.0 +0.1 -0.4 +1.0 -0.5
growth on oleic acid YNB Oleic Acid -0.1 -0.2 +0.4 +0.7 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.4 +0.4 +0.3 -0.3
auxotrophy Dropout Complete -0.0 +0.1 -0.1 +0.9 -0.3
ypd buoyancy 40 hrs Median Buoyancy -0.3 +0.0 -0.0 -0.0 +0.9
ypd buoyancy 40 hrs Low Buoyancy -0.3 -0.2 +0.1 +0.2 +0.8
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.4 +0.4 -0.3 +0.7
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.2 -0.2 +1.0 +0.5
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