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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12255 and 12256 are separated by 337 nucleotides
12256 and 12257 are separated by 210 nucleotides
12257 and 12258 are separated by 412 nucleotides
12258 and 12259 are separated by 215 nucleotides
mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826,218 to 829,062
12255
mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829,400 to 831,173
12256
mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831,384 to 832,562
12257
mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832,975 to 835,014
12258
mRNA_3891: 12259 - K07889 RAB5C Ras-related protein Rab-5C, at 835,230 to 836,530
12259
Group
Condition
mRNA
_3887
mRNA
_3888
mRNA
_3889
mRNA
_3890
mRNA
_3891
12255
12256
12257
12258
12259
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.1
-1.4
+0.8
-2.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.3
-1.1
+0.0
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-0.8
+0.0
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-1.0
+1.1
-1.3
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.0
+0.5
-1.3
growth on ypd
YPD
+0.2
+0.1
-1.1
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.0
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-1.0
+0.7
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
-0.4
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
+0.0
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.0
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
+0.0
+0.9
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-0.6
-0.5
+1.5
auxotrophy
YNB Glucose
+0.0
+0.1
-0.4
+1.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.4
+0.7
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
+0.4
+0.3
-0.3
auxotrophy
Dropout Complete
-0.0
+0.1
-0.1
+0.9
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
-0.0
-0.0
+0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.1
+0.2
+0.8
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.4
+0.4
-0.3
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
+1.0
+0.5
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