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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12261 and 12262 are separated by 383 nucleotides
12262 and 12263 are separated by 551 nucleotides
12263 and 12264 are separated by 125 nucleotides
12264 and 12265 are separated by 172 nucleotides
mRNA_3893: 12261 - K07375 TUBB tubulin beta, at 839,639 to 842,065
12261
mRNA_3894: 12262 - SUPERFAMILY--SSF54695, at 842,449 to 843,578
12262
mRNA_3895: 12263 - Hypothetical Protein, at 844,130 to 844,681
12263
mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844,807 to 845,932
12264
mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846,105 to 847,395
12265
Group
Condition
mRNA
_3893
mRNA
_3894
mRNA
_3895
mRNA
_3896
mRNA
_3897
12261
12262
12263
12264
12265
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.4
+0.2
-4.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.1
-0.1
-1.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.5
-0.3
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.1
-0.6
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.6
-0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-1.2
+0.0
-0.1
+0.4
auxotrophy
Dropout Complete
-0.1
-0.7
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
+0.1
-0.0
+0.2
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.0
-0.5
+0.1
growth on ypd
YPD
+0.4
+0.3
-0.5
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.2
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.9
+0.1
+0.2
+0.8
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.0
-0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
+0.3
-0.7
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.0
+0.3
+0.2
+0.5
growth on oleic acid
YNB Glucose
-0.0
+0.4
+0.0
-0.1
+0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+1.0
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+1.0
+0.6
+0.2
+0.1
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