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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12263 and 12264 are separated by 125 nucleotides
12264 and 12265 are separated by 172 nucleotides
12265 and 12266 are separated by 787 nucleotides
12266 and 12267 are separated by 331 nucleotides
mRNA_3895: 12263 - Hypothetical Protein, at 844,130 to 844,681
12263
mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844,807 to 845,932
12264
mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846,105 to 847,395
12265
mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,183 to 849,090
12266
mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,422 to 850,420
12267
Group
Condition
mRNA
_3895
mRNA
_3896
mRNA
_3897
mRNA
_3898
mRNA
_3899
12263
12264
12265
12266
12267
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-4.2
+0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
+0.8
+0.2
-3.1
auxotrophy
YNB Glucose
+0.2
-0.5
-0.3
-1.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.3
-1.0
-0.4
auxotrophy
Dropout Complete
+0.1
-0.1
+0.2
-0.5
-0.8
growth on ricinoleic acid
YNB Glucose
+0.0
-0.5
+0.1
+0.8
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.6
-0.7
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.2
-0.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
+0.0
+0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.0
+0.4
+0.5
-0.4
growth on ypd
YPD
-0.5
-0.1
-0.3
+0.8
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
+0.5
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.7
+0.7
+0.7
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.4
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.1
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.1
+0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.5
+0.6
-0.8
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.9
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.8
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
+0.1
+0.3
+0.7
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