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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12265 and 12266 are separated by 787 nucleotides
12266 and 12267 are separated by 331 nucleotides
12267 and 12268 are separated by 177 nucleotides
12268 and 12269 are separated by 587 nucleotides
mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846,105 to 847,395
12265
mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,183 to 849,090
12266
mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,422 to 850,420
12267
mRNA_3900: 12268 - SUPERFAMILY--SSF55729, at 850,598 to 851,508
12268
mRNA_3901: 12269 - K00863 DAK, TKFC triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing), at 852,096 to 854,470
12269
Group
Condition
mRNA
_3897
mRNA
_3898
mRNA
_3899
mRNA
_3900
mRNA
_3901
12265
12266
12267
12268
12269
ypd buoyancy
40 hrs No Buoyancy Separation
-4.2
+0.2
-0.5
+0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.2
-3.1
-0.6
+0.1
auxotrophy
YNB Glucose
-0.3
-1.0
-0.8
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-1.0
-0.4
-0.3
+0.2
auxotrophy
Dropout Complete
+0.2
-0.5
-0.8
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.5
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.6
-0.8
-0.5
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.8
-1.3
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.2
-0.2
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.5
-0.4
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.1
+0.6
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
-0.3
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.3
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.3
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.7
-0.6
+0.0
-0.1
growth on ypd
YPD
-0.3
+0.8
+0.3
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.9
+0.5
+0.2
-0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.7
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.6
+0.1
+0.5
+0.1
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