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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12268 and 12269 are separated by 587 nucleotides
12269 and 12270 are separated by 663 nucleotides
12270 and 12271 are separated by 296 nucleotides
12271 and 12272 are separated by 49 nucleotides
mRNA_3900: 12268 - SUPERFAMILY--SSF55729, at 850,598 to 851,508
12268
mRNA_3901: 12269 - K00863 DAK, TKFC triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing), at 852,096 to 854,470
12269
mRNA_3902: 12270 - K12471 EPN epsin, at 855,134 to 857,273
12270
mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857,570 to 859,111
12271
mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859,161 to 861,426
12272
Group
Condition
mRNA
_3900
mRNA
_3901
mRNA
_3902
mRNA
_3903
mRNA
_3904
12268
12269
12270
12271
12272
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.3
N.D.
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
N.D.
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.6
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
N.D.
-0.2
-0.5
auxotrophy
YNB Glucose
-0.2
+0.2
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
N.D.
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
-0.1
+0.1
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
-0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.1
N.D.
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
+0.2
-0.1
growth on ypd
YPD
+0.0
+0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
N.D.
+0.4
+0.3
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