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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12270 and 12271 are separated by 296 nucleotides
12271 and 12272 are separated by 49 nucleotides
12272 and 12273 are separated by 619 nucleotides
12273 and 12274 are separated by 1749 nucleotides
mRNA_3902: 12270 - K12471 EPN epsin, at 855,134 to 857,273
12270
mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857,570 to 859,111
12271
mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859,161 to 861,426
12272
mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862,046 to 863,996
12273
mRNA_3906: 12274 - K03495 gidA, mnmG, MTO1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme, at 865,746 to 868,815
12274
Group
Condition
mRNA
_3902
mRNA
_3903
mRNA
_3904
mRNA
_3905
mRNA
_3906
12270
12271
12272
12273
12274
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.0
-1.9
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
-1.4
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.3
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.5
+0.5
-0.5
auxotrophy
YNB Glucose
N.D.
-0.4
-0.1
-0.2
+0.1
auxotrophy
Dropout Complete
N.D.
-0.2
-0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.3
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.0
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
-0.4
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.2
-0.7
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.3
-0.2
-0.2
growth on ypd
YPD
N.D.
+0.0
+0.1
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.4
+0.8
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
-0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.3
-0.7
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.1
+1.1
+0.3
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