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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12273 and 12274 are separated by 1749 nucleotides
12274 and 12275 are separated by 258 nucleotides
12275 and 12276 are separated by 366 nucleotides
12276 and 12277 are separated by 100 nucleotides
mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862,046 to 863,996
12273
mRNA_3906: 12274 - K03495 gidA, mnmG, MTO1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme, at 865,746 to 868,815
12274
mRNA_3907: 12275 - Hypothetical Protein, at 869,074 to 869,751
12275
mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870,118 to 872,012
12276
mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872,113 to 873,418
12277
Group
Condition
mRNA
_3905
mRNA
_3906
mRNA
_3907
mRNA
_3908
mRNA
_3909
12273
12274
12275
12276
12277
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-1.9
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.3
-0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
+0.3
-0.9
+0.1
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.4
-0.5
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
-1.5
+0.0
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.1
-1.0
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.3
-0.6
-0.1
+0.1
auxotrophy
Dropout Complete
-0.1
-0.1
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.4
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.5
-0.5
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.5
-0.1
+0.4
auxotrophy
YNB Glucose
-0.2
+0.1
-0.5
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.7
+0.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.2
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.0
+0.1
growth on ypd
YPD
-0.3
-0.0
+0.2
-0.1
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.5
+0.6
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
+0.3
-1.0
+0.1
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.4
+0.9
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.7
+0.2
+0.7
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