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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12276 and 12277 are separated by 100 nucleotides
12277 and 12278 are separated by 790 nucleotides
12278 and 12279 are separated by 327 nucleotides
12279 and 12280 are separated by 147 nucleotides
mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870,118 to 872,012
12276
mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872,113 to 873,418
12277
mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874,209 to 878,555
12278
mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878,883 to 880,998
12279
mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881,146 to 884,820
12280
Group
Condition
mRNA
_3908
mRNA
_3909
mRNA
_3910
mRNA
_3911
mRNA
_3912
12276
12277
12278
12279
12280
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.4
N.D.
-0.6
auxotrophy
Dropout Complete
-0.1
+0.1
-0.2
N.D.
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
-0.2
N.D.
-0.2
growth on ypd
YPD
-0.1
+0.7
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose
+0.1
+0.3
-0.1
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.5
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.7
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.6
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.9
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.7
+0.3
N.D.
+0.1
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