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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12284 and 12285 are separated by 144 nucleotides
12285 and 12286 are separated by 591 nucleotides
12286 and 12287 are separated by 518 nucleotides
12287 and 12288 are separated by 330 nucleotides
mRNA_3916: 12284 - K02736 PSMB4 20S proteasome subunit beta 7, at 892,527 to 893,886
12284
mRNA_3917: 12285 - KOG4479 Transcription factor e(y)2, at 894,031 to 894,594
12285
mRNA_3918: 12286 - KOG0024 Sorbitol dehydrogenase, at 895,186 to 897,368
12286
mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897,887 to 899,209
12287
mRNA_3920: 12288 - K12767 RIM15 serine/threonine-protein kinase RIM15, at 899,540 to 908,734
12288
Group
Condition
mRNA
_3916
mRNA
_3917
mRNA
_3918
mRNA
_3919
mRNA
_3920
12284
12285
12286
12287
12288
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.3
-0.9
N.D.
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.1
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
N.D.
-1.2
growth on ypd
YPD
N.D.
-0.6
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.1
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.4
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.2
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.6
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.7
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose
N.D.
+0.3
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.0
+0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.6
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+1.1
+0.4
N.D.
+0.2
auxotrophy
Dropout Complete
N.D.
+1.0
+0.4
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.2
+0.5
N.D.
+0.2
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