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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12290 and 12291 are separated by 282 nucleotides
12291 and 12292 are separated by 254 nucleotides
12292 and 12293 are separated by 157 nucleotides
12293 and 12294 are separated by 319 nucleotides
mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720
12290
mRNA_3923: 12291 - K01465 URA4, pyrC dihydroorotase, at 913,003 to 914,315
12291
mRNA_3924: 12292 - KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily), at 914,570 to 918,595
12292
mRNA_3925: 12293 - Hypothetical Protein, at 918,753 to 919,544
12293
mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279
12294
Group
Condition
mRNA
_3922
mRNA
_3923
mRNA
_3924
mRNA
_3925
mRNA
_3926
12290
12291
12292
12293
12294
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.6
-1.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-2.5
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-2.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-2.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-1.0
-0.7
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-1.9
-0.1
+0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-2.5
+0.5
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.0
-0.8
+0.5
auxotrophy
Dropout Complete
N.D.
N.D.
-2.2
+0.3
+0.7
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-1.6
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-1.0
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-1.0
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.5
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-1.2
+0.4
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.6
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
+0.6
-0.0
growth on ypd
YPD
N.D.
N.D.
+1.1
+0.2
-0.1
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