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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12292 and 12293 are separated by 157 nucleotides
12293 and 12294 are separated by 319 nucleotides
12294 and 12295 are separated by 157 nucleotides
12295 and 12296 are separated by 225 nucleotides
mRNA_3924: 12292 - KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily), at 914,570 to 918,595
12292
mRNA_3925: 12293 - Hypothetical Protein, at 918,753 to 919,544
12293
mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279
12294
mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921,437 to 922,417
12295
mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922,643 to 925,532
12296
Group
Condition
mRNA
_3924
mRNA
_3925
mRNA
_3926
mRNA
_3927
mRNA
_3928
12292
12293
12294
12295
12296
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
-1.0
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-2.2
-0.1
+0.4
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-2.5
+0.3
-0.2
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-2.1
+0.3
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
-0.1
+0.3
N.D.
+0.0
auxotrophy
YNB Glucose
-2.5
+0.5
+0.4
N.D.
+0.0
auxotrophy
Dropout Complete
-2.2
+0.3
+0.7
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.7
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.8
+0.5
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-1.6
+0.1
+0.4
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.2
+0.1
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.5
-0.3
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.1
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.2
+0.4
+0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.3
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.3
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.3
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.6
-0.0
N.D.
+0.1
growth on ypd
YPD
+1.1
+0.2
-0.1
N.D.
+0.0
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