Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12293 and 12294 are separated by 319 nucleotides12294 and 12295 are separated by 157 nucleotides12295 and 12296 are separated by 225 nucleotides12296 and 12297 are separated by 211 nucleotides mRNA_3925: 12293 - Hypothetical Protein, at 918,753 to 919,544 12293 mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279 12294 mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921,437 to 922,417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922,643 to 925,532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925,744 to 929,341 12297
Group Condition mRNA_3925 mRNA_3926 mRNA_3927 mRNA_3928 mRNA_3929
12293 12294 12295 12296 12297
ypd buoyancy 40 hrs No Buoyancy Separation -0.8 +0.5 N.D. +0.1 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.0 -0.1 N.D. +0.3 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.7 -0.0 N.D. +0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.3 N.D. +0.0 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.1 N.D. +0.2 -0.2
growth on oleic acid YNB Glucose -0.3 +0.2 N.D. -0.1 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.1 N.D. -0.2 -0.2
growth on ricinoleic acid YNB Glucose -0.1 +0.3 N.D. -0.0 -0.3
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.0 N.D. -0.1 -0.2
growth on ypd YPD +0.2 -0.1 N.D. +0.0 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.4 N.D. -0.2 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.1 N.D. -0.0 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.0 N.D. +0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.1 N.D. +0.2 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.1 N.D. +0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.3 -0.2 N.D. +0.5 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 -0.0 N.D. +0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.4 +0.4 N.D. -0.1 -0.0
growth on oleic acid YNB Oleic Acid +0.1 +0.4 N.D. +0.2 -0.0
auxotrophy Dropout Complete +0.3 +0.7 N.D. -0.2 +0.1
auxotrophy YNB Glucose +0.5 +0.4 N.D. +0.0 +0.1
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