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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12294 and 12295 are separated by 157 nucleotides
12295 and 12296 are separated by 225 nucleotides
12296 and 12297 are separated by 211 nucleotides
12297 and 12298 are separated by 366 nucleotides
mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279
12294
mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921,437 to 922,417
12295
mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922,643 to 925,532
12296
mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925,744 to 929,341
12297
mRNA_3930: 12298 - Hypothetical Protein, at 929,708 to 931,043
12298
Group
Condition
mRNA
_3926
mRNA
_3927
mRNA
_3928
mRNA
_3929
mRNA
_3930
12294
12295
12296
12297
12298
growth on ypd
YPD
-0.1
N.D.
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.2
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
+0.0
-0.5
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.0
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.1
-0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
-0.1
-0.0
auxotrophy
Dropout Complete
+0.7
N.D.
-0.2
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.2
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose
+0.4
N.D.
+0.0
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.2
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.5
-0.2
+0.7
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