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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12297 and 12298 are separated by 366 nucleotides
12298 and 12299 are separated by 462 nucleotides
12299 and 12300 are separated by 309 nucleotides
12300 and 12301 are separated by 136 nucleotides
mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925,744 to 929,341
12297
mRNA_3930: 12298 - Hypothetical Protein, at 929,708 to 931,043
12298
mRNA_3931: 12299 - BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682], at 931,506 to 935,642
12299
mRNA_3932: 12300 - K18532 AK6, FAP7 adenylate kinase, at 935,952 to 936,713
12300
mRNA_3933: 12301 - Hypothetical Protein, at 936,850 to 939,133
12301
Group
Condition
mRNA
_3929
mRNA
_3930
mRNA
_3931
mRNA
_3932
mRNA
_3933
12297
12298
12299
12300
12301
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
-0.5
N.D.
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
-0.0
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.4
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
+0.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.5
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.2
N.D.
+0.2
growth on ypd
YPD
-0.1
-0.4
+0.2
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.9
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
-0.5
+0.7
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.4
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.3
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
+1.4
N.D.
+0.2
auxotrophy
YNB Glucose
+0.1
-0.1
+0.5
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
+0.7
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
+1.6
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+1.0
N.D.
-0.1
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