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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12301 and 12302 are separated by 1228 nucleotides
12302 and 12303 are separated by 518 nucleotides
12303 and 12304 are separated by 464 nucleotides
12304 and 12305 are separated by 151 nucleotides
mRNA_3933: 12301 - Hypothetical Protein, at 936,850 to 939,133
12301
mRNA_3934: 12302 - K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit, at 940,362 to 944,260
12302
mRNA_3935: 12303 - HMMPfam-ER protein Pkr1-PF08636, at 944,779 to 945,196
12303
mRNA_3936: 12304 - Hypothetical Protein, at 945,661 to 946,219
12304
mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946,371 to 947,832
12305
Group
Condition
mRNA
_3933
mRNA
_3934
mRNA
_3935
mRNA
_3936
mRNA
_3937
12301
12302
12303
12304
12305
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-4.7
-0.3
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-5.1
-0.3
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.4
-4.8
-0.1
-0.4
+0.0
auxotrophy
YNB Glucose
+0.5
-5.3
-0.7
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-5.3
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-5.0
-0.3
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-5.0
+0.0
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-5.0
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-3.9
-0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-4.1
+0.6
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-3.5
-0.2
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-3.7
+0.2
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-3.2
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-2.3
+0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.2
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.4
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.7
+0.1
-0.0
auxotrophy
Dropout Complete
+0.4
+0.1
-0.3
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.3
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.3
+0.3
+0.6
+0.3
growth on ypd
YPD
+0.7
+0.1
+0.1
-0.3
+0.6
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