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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12302 and 12303 are separated by 518 nucleotides
12303 and 12304 are separated by 464 nucleotides
12304 and 12305 are separated by 151 nucleotides
12305 and 12306 are separated by 167 nucleotides
mRNA_3934: 12302 - K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit, at 940,362 to 944,260
12302
mRNA_3935: 12303 - HMMPfam-ER protein Pkr1-PF08636, at 944,779 to 945,196
12303
mRNA_3936: 12304 - Hypothetical Protein, at 945,661 to 946,219
12304
mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946,371 to 947,832
12305
mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948,000 to 949,684
12306
Group
Condition
mRNA
_3934
mRNA
_3935
mRNA
_3936
mRNA
_3937
mRNA
_3938
12302
12303
12304
12305
12306
auxotrophy
YNB Glucose
-5.3
-0.7
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-5.3
-0.1
-0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-5.0
-0.3
-0.0
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-5.1
-0.3
-0.2
-0.1
+0.0
growth on oleic acid
YNB Glucose
-4.8
-0.1
-0.4
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-5.0
-0.1
+0.1
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-4.7
-0.3
-0.3
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-5.0
+0.0
-0.0
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-3.9
-0.2
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-4.1
+0.6
-0.5
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-3.5
-0.2
-0.0
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-3.7
+0.2
+0.2
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-3.2
-0.1
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
+0.1
-0.0
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.1
-0.3
-0.4
auxotrophy
Dropout Complete
+0.1
-0.3
+0.3
-0.2
-0.5
growth on ypd
YPD
+0.1
+0.1
-0.3
+0.6
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.7
+0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.6
+0.3
+0.4
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