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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12305 and 12306 are separated by 167 nucleotides
12306 and 12307 are separated by 334 nucleotides
12307 and 12308 are separated by 429 nucleotides
12308 and 12309 are separated by 168 nucleotides
mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946,371 to 947,832
12305
mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948,000 to 949,684
12306
mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950,019 to 951,719
12307
mRNA_3940: 12308 - KOG3162 Mitochondrial/chloroplast ribosomal protein S18, at 952,149 to 952,942
12308
mRNA_3941: 12309 - Hypothetical Protein, at 953,111 to 953,710
12309
Group
Condition
mRNA
_3937
mRNA
_3938
mRNA
_3939
mRNA
_3940
mRNA
_3941
12305
12306
12307
12308
12309
growth on ricinoleic acid
YNB Glucose
+0.0
-0.5
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.3
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
-0.5
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
+0.1
N.D.
N.D.
growth on ypd
YPD
+0.6
-0.4
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.4
+0.6
N.D.
N.D.
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