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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12309 and 12310 are separated by 374 nucleotides
12310 and 12311 are separated by 134 nucleotides
12311 and 12312 are separated by 441 nucleotides
12312 and 12313 are separated by 329 nucleotides
mRNA_3941: 12309 - Hypothetical Protein, at 953,111 to 953,710
12309
mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954,085 to 956,912
12310
mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957,047 to 960,564
12311
mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961,006 to 963,369
12312
mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963,699 to 967,662
12313
Group
Condition
mRNA
_3941
mRNA
_3942
mRNA
_3943
mRNA
_3944
mRNA
_3945
12309
12310
12311
12312
12313
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.9
N.D.
-1.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
N.D.
-1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-1.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.6
N.D.
-0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
N.D.
-0.9
-0.2
growth on ypd
YPD
N.D.
+0.6
N.D.
-0.9
-0.1
auxotrophy
Dropout Complete
N.D.
-0.1
N.D.
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
-0.6
+0.0
auxotrophy
YNB Glucose
N.D.
-0.1
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
-0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
N.D.
-0.2
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.6
N.D.
+0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+1.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.8
N.D.
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
N.D.
+0.5
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
N.D.
+0.8
+0.2
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