Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12310 and 12311 are separated by 134 nucleotides12311 and 12312 are separated by 441 nucleotides12312 and 12313 are separated by 329 nucleotides12313 and 12314 are separated by 213 nucleotides mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954,085 to 956,912 12310 mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957,047 to 960,564 12311 mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961,006 to 963,369 12312 mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963,699 to 967,662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743 12314
Group Condition mRNA_3942 mRNA_3943 mRNA_3944 mRNA_3945 mRNA_3946
12310 12311 12312 12313 12314
facs on lipid accumulation Sorted Low BODIPY Gate -0.9 N.D. -1.0 +0.1 -2.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 N.D. -1.0 -0.1 -1.3
facs on lipid accumulation Sorted High BODIPY Gate +0.5 N.D. -0.9 -0.2 -1.2
auxotrophy Dropout Complete -0.1 N.D. -0.3 +0.0 -1.0
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -0.6 +0.3 -1.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -1.0 +0.3 -0.2
auxotrophy YNB Glucose -0.1 N.D. -0.2 +0.2 -0.9
growth on ypd YPD +0.6 N.D. -0.9 -0.1 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 N.D. -0.6 +0.0 -0.6
ypd buoyancy 40 hrs High Buoyancy -0.6 N.D. -0.4 +0.3 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 N.D. -0.7 +0.1 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 N.D. +1.0 -0.1 -1.9
auxotrophy YNB Glucose 75mM Methionine +0.2 N.D. -0.3 +0.2 -0.6
growth on oleic acid YNB Glucose +0.6 N.D. +0.4 -0.3 -1.1
growth on ricinoleic acid YNB Glucose +1.0 N.D. +0.2 +0.1 -1.4
ypd buoyancy 40 hrs Low Buoyancy +0.4 N.D. -0.2 -0.0 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.3 N.D. -0.2 +0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 N.D. -0.2 +0.5 +0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 N.D. +0.8 +0.2 -1.3
growth on oleic acid YNB Oleic Acid +0.8 N.D. +0.4 +0.0 -0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 N.D. +0.5 +0.4 -0.2
remove
mRNA_3942
plot
remove
mRNA_3943
plot
remove
mRNA_3944
remove
mRNA_3945
plot
remove
mRNA_3946
plot