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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12311 and 12312 are separated by 441 nucleotides
12312 and 12313 are separated by 329 nucleotides
12313 and 12314 are separated by 213 nucleotides
12314 and 12315 are separated by 123 nucleotides
mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957,047 to 960,564
12311
mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961,006 to 963,369
12312
mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963,699 to 967,662
12313
mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743
12314
mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281
12315
Group
Condition
mRNA
_3943
mRNA
_3944
mRNA
_3945
mRNA
_3946
mRNA
_3947
12311
12312
12313
12314
12315
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
+0.1
-2.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
-0.2
-1.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.0
-0.1
-1.3
+0.5
growth on ypd
YPD
N.D.
-0.9
-0.1
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
+0.3
-1.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.3
-1.1
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.1
-1.4
-0.2
auxotrophy
Dropout Complete
N.D.
-0.3
+0.0
-1.0
+0.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.2
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.0
-0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.8
+0.2
-1.3
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.0
+0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.0
-0.1
-1.9
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
+0.1
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
+0.3
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.0
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.4
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.5
+0.3
+0.4
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