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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12313 and 12314 are separated by 213 nucleotides
12314 and 12315 are separated by 123 nucleotides
12315 and 12316 are separated by 119 nucleotides
12316 and 12317 are separated by 434 nucleotides
mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963,699 to 967,662
12313
mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743
12314
mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281
12315
mRNA_3948: 12316 - Hypothetical Protein, at 972,401 to 974,517
12316
mRNA_3949: 12317 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 974,952 to 977,086
12317
Group
Condition
mRNA
_3945
mRNA
_3946
mRNA
_3947
mRNA
_3948
mRNA
_3949
12313
12314
12315
12316
12317
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.9
+0.4
+0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.2
+0.1
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-1.3
-0.5
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.3
-1.1
-0.3
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-2.1
+0.1
+1.1
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-1.4
-0.2
+0.5
-0.3
growth on ypd
YPD
-0.1
-0.4
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
+0.3
+0.0
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.6
+0.4
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
+0.1
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.3
+0.5
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.2
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
+0.2
-0.9
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.6
-0.1
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-1.1
-0.1
+0.2
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.0
+0.0
+0.2
auxotrophy
YNB Glucose
+0.2
-0.9
-0.1
+0.7
+0.5
auxotrophy
Dropout Complete
+0.0
-1.0
+0.1
+0.8
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
-0.2
+0.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.3
+0.4
-0.5
+0.2
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