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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12314 and 12315 are separated by 123 nucleotides
12315 and 12316 are separated by 119 nucleotides
12316 and 12317 are separated by 434 nucleotides
12317 and 12318 are separated by 360 nucleotides
mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743
12314
mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281
12315
mRNA_3948: 12316 - Hypothetical Protein, at 972,401 to 974,517
12316
mRNA_3949: 12317 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 974,952 to 977,086
12317
mRNA_3950: 12318 - K03456 PPP2R1 serine/threonine-protein phosphatase 2A regulatory subunit A, at 977,447 to 979,479
12318
Group
Condition
mRNA
_3946
mRNA
_3947
mRNA
_3948
mRNA
_3949
mRNA
_3950
12314
12315
12316
12317
12318
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.5
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.4
+0.4
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
+0.1
+1.1
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.1
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-1.4
-0.2
+0.5
-0.3
N.D.
growth on oleic acid
YNB Glucose
-1.1
-0.3
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
+0.0
-1.2
N.D.
growth on ypd
YPD
-0.4
-0.0
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.4
-0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.2
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.9
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.1
+0.2
+0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.2
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
+0.5
+0.5
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose
-0.9
-0.1
+0.7
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.2
+0.6
+0.4
N.D.
auxotrophy
Dropout Complete
-1.0
+0.1
+0.8
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.4
-0.5
+0.2
N.D.
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