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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12318 and 12319 are separated by 979 nucleotides
12319 and 12320 are separated by 85 nucleotides
12320 and 12321 are separated by 162 nucleotides
12321 and 12322 are separated by 362 nucleotides
mRNA_3950: 12318 - K03456 PPP2R1 serine/threonine-protein phosphatase 2A regulatory subunit A, at 977,447 to 979,479
12318
mRNA_3951: 12319 - K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2, at 980,459 to 981,716
12319
mRNA_3952: 12320 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 981,802 to 983,195
12320
mRNA_3953: 12321 - Hypothetical Protein, at 983,358 to 984,692
12321
mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985,055 to 988,023
12322
Group
Condition
mRNA
_3950
mRNA
_3951
mRNA
_3952
mRNA
_3953
mRNA
_3954
12318
12319
12320
12321
12322
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
-0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.8
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.9
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.4
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.5
+0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
+0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
+0.0
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.4
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.0
+0.3
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.4
+0.2
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.2
+0.8
+0.4
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