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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12319 and 12320 are separated by 85 nucleotides
12320 and 12321 are separated by 162 nucleotides
12321 and 12322 are separated by 362 nucleotides
12322 and 12323 are separated by 284 nucleotides
mRNA_3951: 12319 - K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2, at 980,459 to 981,716
12319
mRNA_3952: 12320 - KOG1018 Cytosine deaminase FCY1 and related enzymes, at 981,802 to 983,195
12320
mRNA_3953: 12321 - Hypothetical Protein, at 983,358 to 984,692
12321
mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985,055 to 988,023
12322
mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988,308 to 991,427
12323
Group
Condition
mRNA
_3951
mRNA
_3952
mRNA
_3953
mRNA
_3954
mRNA
_3955
12319
12320
12321
12322
12323
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.0
+0.2
-3.7
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.0
+0.3
-3.4
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
+0.1
-3.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.1
+0.1
-2.9
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.6
-0.3
-0.3
auxotrophy
YNB Glucose
N.D.
+0.2
+0.3
+0.1
-2.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.3
+0.0
-2.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
-0.3
-1.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
+0.2
+0.1
-2.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.4
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.0
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.4
+0.2
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.0
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
+0.6
-0.3
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
-0.1
+1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
+0.1
+0.0
+1.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.4
-0.0
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.3
+0.0
+0.7
growth on ypd
YPD
N.D.
-0.2
+0.8
+0.4
+2.7
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