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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12321 and 12322 are separated by 362 nucleotides
12322 and 12323 are separated by 284 nucleotides
12323 and 12324 are separated by 379 nucleotides
12324 and 12325 are separated by 884 nucleotides
mRNA_3953: 12321 - Hypothetical Protein, at 983,358 to 984,692
12321
mRNA_3954: 12322 - KOG1426 FOG RCC1 domain, at 985,055 to 988,023
12322
mRNA_3955: 12323 - K02355 fusA, GFM, EFG elongation factor G, at 988,308 to 991,427
12323
mRNA_3956: 12324 - KOG1843 Uncharacterized conserved protein, at 991,807 to 993,961
12324
mRNA_3957: 12325 - KOG0254 Predicted transporter (major facilitator superfamily), at 994,846 to 997,069
12325
Group
Condition
mRNA
_3953
mRNA
_3954
mRNA
_3955
mRNA
_3956
mRNA
_3957
12321
12322
12323
12324
12325
auxotrophy
Dropout Complete
+0.1
+0.1
-3.3
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-2.9
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
-3.7
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
-3.4
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-2.2
-0.7
-0.3
auxotrophy
YNB Glucose
+0.3
+0.1
-2.5
-0.4
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.0
-2.0
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-1.3
-0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.8
+0.5
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.2
+0.8
-1.8
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
+0.0
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
-1.3
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.3
+0.9
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.5
+1.5
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+1.0
+1.3
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.3
+1.0
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
+1.2
+0.5
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
+1.6
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.0
+0.7
+1.5
-0.6
growth on ypd
YPD
+0.8
+0.4
+2.7
-1.0
-0.1
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