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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12329 and 12330 are separated by 240 nucleotides
12330 and 12331 are separated by 67 nucleotides
12331 and 12332 are separated by 102 nucleotides
12332 and 12333 are separated by 786 nucleotides
mRNA_3961: 12329 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,008,252 to 1,011,828
12329
mRNA_3962: 12330 - K09647 IMP1 mitochondrial inner membrane protease subunit 1, at 1,012,069 to 1,012,859
12330
mRNA_3963: 12331 - HMMPfam-Domain of unknown function (DUF4504)-PF14953, at 1,012,927 to 1,013,924
12331
mRNA_3964: 12332 - Hypothetical Protein, at 1,014,027 to 1,014,928
12332
mRNA_3965: 12333 - Hypothetical Protein, at 1,015,715 to 1,016,506
12333
Group
Condition
mRNA
_3961
mRNA
_3962
mRNA
_3963
mRNA
_3964
mRNA
_3965
12329
12330
12331
12332
12333
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-1.1
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
N.D.
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
N.D.
+0.3
+0.3
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.4
+0.3
-0.2
auxotrophy
Dropout Complete
-0.2
N.D.
-0.2
+0.3
+0.1
growth on ypd
YPD
-0.1
N.D.
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.3
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.0
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
-0.5
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
N.D.
-0.4
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.4
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.3
+0.3
+0.2
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