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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12330 and 12331 are separated by 67 nucleotides
12331 and 12332 are separated by 102 nucleotides
12332 and 12333 are separated by 786 nucleotides
12333 and 12334 are separated by 252 nucleotides
mRNA_3962: 12330 - K09647 IMP1 mitochondrial inner membrane protease subunit 1, at 1,012,069 to 1,012,859
12330
mRNA_3963: 12331 - HMMPfam-Domain of unknown function (DUF4504)-PF14953, at 1,012,927 to 1,013,924
12331
mRNA_3964: 12332 - Hypothetical Protein, at 1,014,027 to 1,014,928
12332
mRNA_3965: 12333 - Hypothetical Protein, at 1,015,715 to 1,016,506
12333
mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1,016,759 to 1,018,391
12334
Group
Condition
mRNA
_3962
mRNA
_3963
mRNA
_3964
mRNA
_3965
mRNA
_3966
12330
12331
12332
12333
12334
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.1
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.1
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.1
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.3
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
+0.5
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
+0.3
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.4
-0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.0
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
-0.2
+0.1
growth on ypd
YPD
N.D.
+0.1
+0.1
+0.0
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.3
+0.2
+0.2
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