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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12331 and 12332 are separated by 102 nucleotides
12332 and 12333 are separated by 786 nucleotides
12333 and 12334 are separated by 252 nucleotides
12334 and 12335 are separated by 475 nucleotides
mRNA_3963: 12331 - HMMPfam-Domain of unknown function (DUF4504)-PF14953, at 1,012,927 to 1,013,924
12331
mRNA_3964: 12332 - Hypothetical Protein, at 1,014,027 to 1,014,928
12332
mRNA_3965: 12333 - Hypothetical Protein, at 1,015,715 to 1,016,506
12333
mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1,016,759 to 1,018,391
12334
mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1,018,867 to 1,022,845
12335
Group
Condition
mRNA
_3963
mRNA
_3964
mRNA
_3965
mRNA
_3966
mRNA
_3967
12331
12332
12333
12334
12335
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.1
-0.3
+0.0
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.3
-0.3
+0.4
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.5
-0.1
+0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
-0.3
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-0.2
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose
-0.2
+0.2
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.0
-0.0
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.1
+0.2
-0.1
growth on ypd
YPD
+0.1
+0.1
+0.0
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
-0.2
+0.3
+0.2
auxotrophy
Dropout Complete
-0.2
+0.3
+0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.2
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
+0.2
+0.2
-0.2
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