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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12334 and 12335 are separated by 475 nucleotides
12335 and 12336 are separated by 139 nucleotides
12336 and 12337 are separated by 835 nucleotides
12337 and 12338 are separated by 187 nucleotides
mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1,016,759 to 1,018,391
12334
mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1,018,867 to 1,022,845
12335
mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1,022,985 to 1,024,769
12336
mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1,025,605 to 1,026,362
12337
mRNA_3970: 12338 - Hypothetical Protein, at 1,026,550 to 1,027,191
12338
Group
Condition
mRNA
_3966
mRNA
_3967
mRNA
_3968
mRNA
_3969
mRNA
_3970
12334
12335
12336
12337
12338
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
-2.0
-0.6
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.0
-0.7
-0.6
+0.1
growth on ypd
YPD
+0.0
-0.3
-0.4
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
-0.7
+0.5
-0.6
auxotrophy
Dropout Complete
+0.3
-0.3
-0.1
-0.6
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.7
-0.8
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
+0.1
-1.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.7
-0.5
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.5
-0.4
-0.3
auxotrophy
YNB Glucose
+0.1
-0.3
+0.5
-0.7
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.2
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.7
-0.2
+0.6
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.2
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
+0.1
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.2
-0.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.2
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.4
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.4
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.4
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.2
+0.0
+0.5
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