Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12335 and 12336 are separated by 139 nucleotides12336 and 12337 are separated by 835 nucleotides12337 and 12338 are separated by 187 nucleotides12338 and 12339 are separated by 661 nucleotides mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1,018,867 to 1,022,845 12335 mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1,022,985 to 1,024,769 12336 mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1,025,605 to 1,026,362 12337 mRNA_3970: 12338 - Hypothetical Protein, at 1,026,550 to 1,027,191 12338 mRNA_3971: 12339 - K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e, at 1,027,853 to 1,028,767 12339
Group Condition mRNA_3967 mRNA_3968 mRNA_3969 mRNA_3970 mRNA_3971
12335 12336 12337 12338 12339
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -2.0 -0.6 +0.8 N.D.
auxotrophy Dropout Complete -0.3 -0.1 -0.6 -0.6 N.D.
growth on ypd YPD -0.3 -0.4 -0.4 -0.2 N.D.
growth on ricinoleic acid YNB Glucose -0.4 -0.7 +0.5 -0.6 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.7 -0.6 +0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 -0.8 -0.1 +0.5 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.1 -1.1 +0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.7 -0.5 +0.5 -0.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 -0.2 +0.6 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.2 -0.5 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.5 -0.4 -0.3 N.D.
auxotrophy YNB Glucose -0.3 +0.5 -0.7 +0.0 N.D.
growth on oleic acid YNB Glucose -0.2 -0.2 +0.4 -0.4 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.1 +0.2 -0.6 N.D.
growth on oleic acid YNB Oleic Acid -0.1 -0.1 +0.4 -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.2 -0.4 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.4 -0.3 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.4 -0.0 +0.5 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.4 -0.4 +0.3 -0.0 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.2 +0.3 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.2 +0.0 +0.5 N.D.
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