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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12336 and 12337 are separated by 835 nucleotides
12337 and 12338 are separated by 187 nucleotides
12338 and 12339 are separated by 661 nucleotides
12339 and 12340 are separated by 598 nucleotides
mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1,022,985 to 1,024,769
12336
mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1,025,605 to 1,026,362
12337
mRNA_3970: 12338 - Hypothetical Protein, at 1,026,550 to 1,027,191
12338
mRNA_3971: 12339 - K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e, at 1,027,853 to 1,028,767
12339
mRNA_3972: 12340 - K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X, at 1,029,366 to 1,031,642
12340
Group
Condition
mRNA
_3968
mRNA
_3969
mRNA
_3970
mRNA
_3971
mRNA
_3972
12336
12337
12338
12339
12340
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.6
+0.8
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.6
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.6
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.4
-0.4
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-1.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+0.5
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.5
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.1
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.5
-0.7
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.5
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.4
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.4
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.6
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.1
N.D.
N.D.
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