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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12340 and 12341 are separated by 870 nucleotides
12341 and 12342 are separated by 31 nucleotides
12342 and 12343 are separated by 725 nucleotides
12343 and 12344 are separated by 400 nucleotides
mRNA_3972: 12340 - K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X, at 1,029,366 to 1,031,642
12340
mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1,032,513 to 1,033,671
12341
mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1,033,703 to 1,040,837
12342
mRNA_3975: 12343 - KOG1938 Protein with predicted involvement in meiosis (GSG1), at 1,041,563 to 1,046,675
12343
mRNA_3976: 12344 - K20473 NBAS neuroblastoma-amplified sequence, at 1,047,076 to 1,050,963
12344
Group
Condition
mRNA
_3972
mRNA
_3973
mRNA
_3974
mRNA
_3975
mRNA
_3976
12340
12341
12342
12343
12344
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
+0.0
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.3
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.3
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.1
-0.1
N.D.
growth on ypd
YPD
N.D.
+0.1
-0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.5
N.D.
auxotrophy
Dropout Complete
N.D.
-0.0
+0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.1
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.1
+0.9
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
+0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.2
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.1
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
-0.0
+0.8
N.D.
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