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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12342 and 12343 are separated by 725 nucleotides
12343 and 12344 are separated by 400 nucleotides
12344 and 12345 are separated by 234 nucleotides
12345 and 12346 are separated by 133 nucleotides
mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1,033,703 to 1,040,837
12342
mRNA_3975: 12343 - KOG1938 Protein with predicted involvement in meiosis (GSG1), at 1,041,563 to 1,046,675
12343
mRNA_3976: 12344 - K20473 NBAS neuroblastoma-amplified sequence, at 1,047,076 to 1,050,963
12344
mRNA_3977: 12345 - KOG4689 Predicted RNase, at 1,051,198 to 1,052,896
12345
mRNA_3978: 12346 - Hypothetical Protein, at 1,053,030 to 1,054,389
12346
Group
Condition
mRNA
_3974
mRNA
_3975
mRNA
_3976
mRNA
_3977
mRNA
_3978
12342
12343
12344
12345
12346
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
N.D.
-0.1
+0.1
growth on ypd
YPD
-0.3
+0.6
N.D.
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
N.D.
+0.4
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.5
N.D.
+0.2
-0.8
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
N.D.
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.9
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.9
N.D.
-0.2
+0.2
auxotrophy
Dropout Complete
+0.1
+0.6
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.7
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.8
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.6
N.D.
+0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.6
N.D.
+0.2
+0.5
auxotrophy
YNB Glucose
+0.0
+0.6
N.D.
+0.1
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.6
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.6
N.D.
+0.5
+0.5
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