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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12345 and 12346 are separated by 133 nucleotides
12346 and 12347 are separated by 353 nucleotides
12347 and 12348 are separated by 335 nucleotides
12348 and 12349 are separated by 293 nucleotides
mRNA_3977: 12345 - KOG4689 Predicted RNase, at 1,051,198 to 1,052,896
12345
mRNA_3978: 12346 - Hypothetical Protein, at 1,053,030 to 1,054,389
12346
mRNA_3979: 12347 - K07119 K07119 uncharacterized protein, at 1,054,743 to 1,056,048
12347
mRNA_3980: 12348 - KOG1196 Predicted NAD-dependent oxidoreductase, at 1,056,384 to 1,057,964
12348
mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1,058,258 to 1,059,791
12349
Group
Condition
mRNA
_3977
mRNA
_3978
mRNA
_3979
mRNA
_3980
mRNA
_3981
12345
12346
12347
12348
12349
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.8
N.D.
+0.2
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
N.D.
-0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
N.D.
-0.9
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
N.D.
-0.6
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.1
N.D.
-0.6
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.5
N.D.
-0.6
-0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.4
+0.3
growth on ypd
YPD
-0.0
-0.4
N.D.
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.4
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.5
N.D.
+0.0
-0.6
auxotrophy
Dropout Complete
-0.1
+0.4
N.D.
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
N.D.
-0.4
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
+0.1
+0.7
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.4
N.D.
+0.4
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
-0.0
+1.0
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