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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12348 and 12349 are separated by 293 nucleotides
12349 and 12350 are separated by 165 nucleotides
12350 and 12351 are separated by 466 nucleotides
12351 and 12352 are separated by 1020 nucleotides
mRNA_3980: 12348 - KOG1196 Predicted NAD-dependent oxidoreductase, at 1,056,384 to 1,057,964
12348
mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1,058,258 to 1,059,791
12349
mRNA_3982: 12350 - K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C, at 1,059,957 to 1,071,266
12350
mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1,071,733 to 1,072,892
12351
mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521
12352
Group
Condition
mRNA
_3980
mRNA
_3981
mRNA
_3982
mRNA
_3983
mRNA
_3984
12348
12349
12350
12351
12352
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.4
N.D.
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.6
-0.4
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.1
N.D.
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.6
N.D.
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
N.D.
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.5
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.0
N.D.
-0.2
-0.3
auxotrophy
YNB Glucose
+0.1
-0.6
N.D.
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.5
+0.0
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
-0.1
-0.0
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.2
-0.6
growth on ypd
YPD
+0.4
+0.0
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
N.D.
+0.1
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.7
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+1.0
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.8
N.D.
+0.4
-0.4
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