Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12348 and 12349 are separated by 293 nucleotides12349 and 12350 are separated by 165 nucleotides12350 and 12351 are separated by 466 nucleotides12351 and 12352 are separated by 1020 nucleotides mRNA_3980: 12348 - KOG1196 Predicted NAD-dependent oxidoreductase, at 1,056,384 to 1,057,964 12348 mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1,058,258 to 1,059,791 12349 mRNA_3982: 12350 - K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C, at 1,059,957 to 1,071,266 12350 mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1,071,733 to 1,072,892 12351 mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521 12352
Group Condition mRNA_3980 mRNA_3981 mRNA_3982 mRNA_3983 mRNA_3984
12348 12349 12350 12351 12352
growth on ricinoleic acid YNB Methylricinoleic Acid -0.9 -0.4 N.D. -0.3 -0.3
growth on oleic acid YNB Glucose -0.6 -0.4 N.D. -0.4 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -1.1 N.D. -0.4 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.6 N.D. -0.5 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.4 N.D. -0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 -0.5 N.D. +0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 +0.0 N.D. -0.2 -0.3
auxotrophy YNB Glucose +0.1 -0.6 N.D. -0.3 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.4 N.D. -0.1 -0.3
growth on ricinoleic acid YNB Glucose -0.5 -0.2 N.D. +0.1 -0.0
growth on oleic acid YNB Oleic Acid -0.5 +0.0 N.D. -0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.3 N.D. +0.3 -0.4
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.4 N.D. +0.2 -0.1
auxotrophy Dropout Complete -0.1 -0.0 N.D. -0.0 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.1 N.D. +0.2 -0.6
growth on ypd YPD +0.4 +0.0 N.D. -0.5 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.0 N.D. +0.4 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 +0.3 N.D. +0.1 +0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.7 N.D. +0.4 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 +1.0 N.D. +0.3 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.4 +0.8 N.D. +0.4 -0.4
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