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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12351 and 12352 are separated by 1020 nucleotides
12352 and 12353 are separated by 727 nucleotides
12353 and 12354 are separated by 285 nucleotides
12354 and 12355 are separated by 1156 nucleotides
mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1,071,733 to 1,072,892
12351
mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521
12352
mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580
12353
mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824
12354
mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833
12355
Group
Condition
mRNA
_3983
mRNA
_3984
mRNA
_3985
mRNA
_3986
mRNA
_3987
12351
12352
12353
12354
12355
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
N.D.
-0.6
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.6
N.D.
-0.1
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
N.D.
+0.1
-0.3
growth on ypd
YPD
-0.5
+0.1
N.D.
-0.1
+0.5
growth on oleic acid
YNB Glucose
-0.4
-0.2
N.D.
-0.1
+0.6
auxotrophy
YNB Glucose
-0.3
-0.2
N.D.
-0.1
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.6
N.D.
-0.9
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.3
N.D.
+0.1
+0.9
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.2
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
N.D.
+1.1
-0.1
auxotrophy
Dropout Complete
-0.0
-0.2
N.D.
-0.4
+1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
N.D.
-0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.4
N.D.
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
N.D.
+0.4
+1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
N.D.
+0.7
+0.7
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.3
+1.1
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