Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12351 and 12352 are separated by 1020 nucleotides12352 and 12353 are separated by 727 nucleotides12353 and 12354 are separated by 285 nucleotides12354 and 12355 are separated by 1156 nucleotides mRNA_3983: 12351 - HMMPfam-Mpv17 / PMP22 family-PF04117, at 1,071,733 to 1,072,892 12351 mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521 12352 mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580 12353 mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824 12354 mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833 12355
Group Condition mRNA_3983 mRNA_3984 mRNA_3985 mRNA_3986 mRNA_3987
12351 12352 12353 12354 12355
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.3 N.D. -0.6 -1.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.6 N.D. -0.1 -1.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.1 N.D. +0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy +0.3 -0.4 N.D. +0.1 -0.3
growth on ypd YPD -0.5 +0.1 N.D. -0.1 +0.5
growth on oleic acid YNB Glucose -0.4 -0.2 N.D. -0.1 +0.6
auxotrophy YNB Glucose -0.3 -0.2 N.D. -0.1 +0.6
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.3 N.D. -0.0 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.3 N.D. -0.2 +0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.6 N.D. -0.9 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.4 -0.1 N.D. +0.3 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 N.D. +0.1 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.5 -0.3 N.D. +0.1 +0.9
growth on oleic acid YNB Oleic Acid -0.1 -0.1 N.D. -0.2 +0.8
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.2 N.D. +1.1 -0.1
auxotrophy Dropout Complete -0.0 -0.2 N.D. -0.4 +1.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 +0.1 N.D. -0.4 +0.4
facs on lipid accumulation Sorted High BODIPY Gate +0.4 -0.4 N.D. +0.4 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.3 N.D. +0.4 +1.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.3 N.D. +0.7 +0.7
growth on ricinoleic acid YNB Glucose +0.1 -0.0 N.D. +0.3 +1.1
remove
mRNA_3983
plot
remove
mRNA_3984
plot
remove
mRNA_3985
remove
mRNA_3986
plot
remove
mRNA_3987
plot