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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12352 and 12353 are separated by 727 nucleotides
12353 and 12354 are separated by 285 nucleotides
12354 and 12355 are separated by 1156 nucleotides
12355 and 12356 are separated by 1972 nucleotides
mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521
12352
mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580
12353
mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824
12354
mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833
12355
mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290
12356
Group
Condition
mRNA
_3984
mRNA
_3985
mRNA
_3986
mRNA
_3987
mRNA
_3988
12352
12353
12354
12355
12356
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.6
-1.2
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
-0.1
-1.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.4
+0.4
-2.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
+0.1
-0.3
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.0
+0.1
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+1.1
-0.1
-2.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.7
+0.7
-1.9
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.3
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
+0.8
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
-0.3
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.1
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
-0.9
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.4
+1.3
-1.0
growth on ypd
YPD
+0.1
N.D.
-0.1
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.4
+0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.2
+0.6
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.3
+1.1
+0.7
auxotrophy
Dropout Complete
-0.2
N.D.
-0.4
+1.0
+1.8
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.2
+0.7
+2.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.1
+0.9
+1.9
auxotrophy
YNB Glucose
-0.2
N.D.
-0.1
+0.6
+2.4
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