Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12354 and 12355 are separated by 1156 nucleotides12355 and 12356 are separated by 1972 nucleotides12356 and 12357 are separated by 343 nucleotides12357 and 12358 are separated by 125 nucleotides mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824 12354 mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833 12355 mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290 12356 mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441 12357 mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527 12358
Group Condition mRNA_3986 mRNA_3987 mRNA_3988 mRNA_3989 mRNA_3990
12354 12355 12356 12357 12358
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.4 -2.2 N.D. -1.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 -1.2 -1.1 N.D. +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.3 -1.2 N.D. -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -1.3 -0.7 N.D. +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 +0.1 -1.3 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.7 +0.7 -1.9 N.D. -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +1.1 -0.1 -2.1 N.D. +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.9 +0.4 +0.2 N.D. -0.1
growth on oleic acid YNB Oleic Acid -0.2 +0.8 -0.8 N.D. -0.2
growth on oleic acid YNB Glucose -0.1 +0.6 -0.2 N.D. -0.6
growth on ypd YPD -0.1 +0.5 -0.1 N.D. -0.5
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.3 -0.4 N.D. +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.3 +0.1 N.D. +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 +1.3 -1.0 N.D. -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.4 +0.2 +0.4 N.D. -0.4
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.2 +0.6 N.D. +0.0
growth on ricinoleic acid YNB Glucose +0.3 +1.1 +0.7 N.D. -0.3
auxotrophy Dropout Complete -0.4 +1.0 +1.8 N.D. +0.3
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.9 +1.9 N.D. -0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.7 +2.2 N.D. +0.3
auxotrophy YNB Glucose -0.1 +0.6 +2.4 N.D. +0.6
remove
mRNA_3986
plot
remove
mRNA_3987
plot
remove
mRNA_3988
remove
mRNA_3989
plot
remove
mRNA_3990
plot