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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12354 and 12355 are separated by 1156 nucleotides
12355 and 12356 are separated by 1972 nucleotides
12356 and 12357 are separated by 343 nucleotides
12357 and 12358 are separated by 125 nucleotides
mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824
12354
mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833
12355
mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290
12356
mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441
12357
mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527
12358
Group
Condition
mRNA
_3986
mRNA
_3987
mRNA
_3988
mRNA
_3989
mRNA
_3990
12354
12355
12356
12357
12358
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.4
-2.2
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-1.2
-1.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-1.2
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-1.3
-0.7
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-1.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.7
-1.9
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
-0.1
-2.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.4
+0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.8
-0.8
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.6
-0.2
N.D.
-0.6
growth on ypd
YPD
-0.1
+0.5
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
-0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+1.3
-1.0
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
+0.4
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+1.1
+0.7
N.D.
-0.3
auxotrophy
Dropout Complete
-0.4
+1.0
+1.8
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.9
+1.9
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.7
+2.2
N.D.
+0.3
auxotrophy
YNB Glucose
-0.1
+0.6
+2.4
N.D.
+0.6
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