Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12356 and 12357 are separated by 343 nucleotides
12357 and 12358 are separated by 125 nucleotides
12358 and 12359 are separated by 197 nucleotides
12359 and 12360 are separated by 921 nucleotides
mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290
12356
mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441
12357
mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527
12358
mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,089,725 to 1,094,754
12359
mRNA_3992: 12360 - KOG0627 Heat shock transcription factor, at 1,095,676 to 1,096,761
12360
Group
Condition
mRNA
_3988
mRNA
_3989
mRNA
_3990
mRNA
_3991
mRNA
_3992
12356
12357
12358
12359
12360
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
N.D.
-1.1
+0.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
N.D.
+0.3
+0.6
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
N.D.
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.2
N.D.
-0.7
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
N.D.
-0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
N.D.
+0.0
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.8
N.D.
-0.2
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-0.4
-0.0
-0.5
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.0
+0.1
-0.5
growth on ypd
YPD
-0.1
N.D.
-0.5
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.3
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.7
N.D.
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
+0.0
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.9
N.D.
-0.1
+0.2
-0.1
auxotrophy
Dropout Complete
+1.8
N.D.
+0.3
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+2.2
N.D.
+0.3
+0.3
+0.0
auxotrophy
YNB Glucose
+2.4
N.D.
+0.6
+0.3
-0.1
remove
mRNA_3988
plot
remove
mRNA_3989
plot
remove
mRNA_3990
remove
mRNA_3991
plot
remove
mRNA_3992
plot