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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12358 and 12359 are separated by 197 nucleotides
12359 and 12360 are separated by 921 nucleotides
12360 and 12361 are separated by 1535 nucleotides
12361 and 12362 are separated by 601 nucleotides
mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527
12358
mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,089,725 to 1,094,754
12359
mRNA_3992: 12360 - KOG0627 Heat shock transcription factor, at 1,095,676 to 1,096,761
12360
mRNA_3993: 12361 - KOG0627 Heat shock transcription factor, at 1,098,297 to 1,099,754
12361
mRNA_3994: 12362 - K11484 HOS3 histone deacetylase HOS3, at 1,100,356 to 1,102,987
12362
Group
Condition
mRNA
_3990
mRNA
_3991
mRNA
_3992
mRNA
_3993
mRNA
_3994
12358
12359
12360
12361
12362
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.0
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.5
-0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.1
+0.0
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.6
+0.2
+0.1
+0.3
-0.5
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.3
+0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.1
+0.4
-0.5
growth on ypd
YPD
-0.5
+0.4
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.3
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.4
+0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.3
+0.4
-0.3
+0.2
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.0
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.6
-0.7
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose
+0.6
+0.3
-0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.0
+0.6
-0.0
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