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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12369 and 12370 are separated by 1396 nucleotides
12370 and 12371 are separated by 390 nucleotides
12371 and 12372 are separated by 831 nucleotides
12372 and 12373 are separated by 581 nucleotides
mRNA_4001: 12369 - Hypothetical Protein, at 1,120,391 to 1,121,103
12369
mRNA_4002: 12370 - KOG4089 Predicted mitochondrial ribosomal protein L23, at 1,122,500 to 1,123,489
12370
mRNA_4003: 12371 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 1,123,880 to 1,126,136
12371
mRNA_4004: 12372 - KOG1341 Na+/K+ transporter, at 1,126,968 to 1,131,164
12372
mRNA_4005: 12373 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,131,746 to 1,132,749
12373
Group
Condition
mRNA
_4001
mRNA
_4002
mRNA
_4003
mRNA
_4004
mRNA
_4005
12369
12370
12371
12372
12373
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
+0.2
-0.6
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
-0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.6
-2.4
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.2
-0.6
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.2
-1.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
+0.2
-0.3
+0.5
auxotrophy
YNB Glucose
-0.1
N.D.
+0.3
-0.4
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.2
-0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.0
-1.0
+1.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.2
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.5
-0.3
+0.4
growth on ypd
YPD
+0.7
N.D.
+0.3
-0.3
+0.2
auxotrophy
Dropout Complete
+0.2
N.D.
+0.4
-0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.2
-0.6
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
+0.3
-0.8
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
+0.3
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
+0.2
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
+0.3
-0.4
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.5
N.D.
+0.1
-0.3
+1.0
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