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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12373 and 12374 are separated by 421 nucleotides
12374 and 12375 are separated by 251 nucleotides
12375 and 12376 are separated by 300 nucleotides
12376 and 12377 are separated by 400 nucleotides
mRNA_4005: 12373 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,131,746 to 1,132,749
12373
mRNA_4006: 12374 - Hypothetical Protein, at 1,133,171 to 1,133,679
12374
mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432
12375
mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810
12376
mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922
12377
Group
Condition
mRNA
_4005
mRNA
_4006
mRNA
_4007
mRNA
_4008
mRNA
_4009
12373
12374
12375
12376
12377
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
-0.7
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.1
-0.2
-0.1
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.0
-0.1
-1.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
-0.1
-0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.1
-0.0
+0.1
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
+0.3
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.2
+0.3
-0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
+0.1
-0.4
+0.5
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.1
-0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
+0.0
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.5
+0.2
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.1
+0.0
+0.4
-0.3
auxotrophy
YNB Glucose
+0.6
+0.1
+0.0
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.4
-0.1
+0.1
auxotrophy
Dropout Complete
+0.6
+0.3
+0.1
-0.0
+0.3
growth on ypd
YPD
+0.2
+0.1
+0.1
-0.1
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.0
-0.2
-0.1
+1.1
growth on oleic acid
YNB Oleic Acid
+1.2
+0.2
+0.3
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
+0.1
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.2
+0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
-0.1
+0.1
+0.1
+1.1
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