Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12373 and 12374 are separated by 421 nucleotides12374 and 12375 are separated by 251 nucleotides12375 and 12376 are separated by 300 nucleotides12376 and 12377 are separated by 400 nucleotides mRNA_4005: 12373 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,131,746 to 1,132,749 12373 mRNA_4006: 12374 - Hypothetical Protein, at 1,133,171 to 1,133,679 12374 mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922 12377
Group Condition mRNA_4005 mRNA_4006 mRNA_4007 mRNA_4008 mRNA_4009
12373 12374 12375 12376 12377
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 -0.4 -0.7 +0.0 -0.5
ypd buoyancy 40 hrs Low Buoyancy -1.0 +0.1 -0.2 -0.1 -1.0
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.0 -0.0 -0.1 -1.1
ypd buoyancy 40 hrs High Buoyancy -0.4 +0.2 -0.1 -0.0 -0.9
facs on lipid accumulation Sorted High BODIPY Gate -0.5 +0.1 -0.0 +0.1 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid +0.6 +0.1 +0.3 -0.2 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 +0.2 +0.3 -0.1 -0.7
facs on lipid accumulation Sorted Low BODIPY Gate +1.1 +0.1 -0.4 +0.5 -0.9
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.0 -0.1 -0.1 -0.3 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.4 +0.1 +0.0 +0.0 +0.1
growth on oleic acid YNB Glucose +0.5 +0.2 +0.2 -0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.5 +0.1 +0.0 +0.4 -0.3
auxotrophy YNB Glucose +0.6 +0.1 +0.0 -0.1 +0.4
growth on ricinoleic acid YNB Glucose +0.5 +0.2 +0.4 -0.1 +0.1
auxotrophy Dropout Complete +0.6 +0.3 +0.1 -0.0 +0.3
growth on ypd YPD +0.2 +0.1 +0.1 -0.1 +1.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 +0.0 -0.2 -0.1 +1.1
growth on oleic acid YNB Oleic Acid +1.2 +0.2 +0.3 -0.0 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 +0.3 +0.1 -0.1 +0.8
auxotrophy YNB Glucose 75mM Arginine +1.0 +0.2 +0.0 +0.2 +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +1.2 -0.1 +0.1 +0.1 +1.1
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