Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12374 and 12375 are separated by 251 nucleotides12375 and 12376 are separated by 300 nucleotides12376 and 12377 are separated by 400 nucleotides12377 and 12378 are separated by 616 nucleotides mRNA_4006: 12374 - Hypothetical Protein, at 1,133,171 to 1,133,679 12374 mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554 12378
Group Condition mRNA_4006 mRNA_4007 mRNA_4008 mRNA_4009 mRNA_4010
12374 12375 12376 12377 12378
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -0.4 +0.5 -0.9 -0.3
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 -0.0 -0.9 -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.0 -0.1 -1.1 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.7 +0.0 -0.5 +0.8
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.2 -0.1 -1.0 +0.5
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.3 -0.2 -0.5 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.1 -0.3 +0.1 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.3 -0.1 -0.7 +0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.0 +0.1 -0.7 +0.5
auxotrophy YNB Glucose +0.1 +0.0 -0.1 +0.4 -0.3
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.0 +0.0 +0.1 -0.2
auxotrophy Dropout Complete +0.3 +0.1 -0.0 +0.3 -0.5
growth on oleic acid YNB Oleic Acid +0.2 +0.3 -0.0 -0.0 -0.1
growth on oleic acid YNB Glucose +0.2 +0.2 -0.1 +0.0 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.0 +0.4 -0.3 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.0 +0.2 +0.5 -0.3
growth on ricinoleic acid YNB Glucose +0.2 +0.4 -0.1 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.2 -0.1 +1.1 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.1 -0.1 +0.8 -0.1
growth on ypd YPD +0.1 +0.1 -0.1 +1.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.1 +0.1 +1.1 -0.2
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