Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12375 and 12376 are separated by 300 nucleotides12376 and 12377 are separated by 400 nucleotides12377 and 12378 are separated by 616 nucleotides12378 and 12379 are separated by 384 nucleotides mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810 12376 mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704 12379
Group Condition mRNA_4007 mRNA_4008 mRNA_4009 mRNA_4010 mRNA_4011
12375 12376 12377 12378 12379
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 -0.2 -0.5 -0.1 -0.5
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.0 -0.9 -0.2 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.5 -0.9 -0.3 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 -0.1 -0.7 +0.2 -0.4
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.1 -1.0 +0.5 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.1 -1.1 +0.2 +0.4
facs on lipid accumulation Sorted High BODIPY Gate -0.0 +0.1 -0.7 +0.5 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.3 +0.1 +0.1 -0.1
auxotrophy Dropout Complete +0.1 -0.0 +0.3 -0.5 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.0 +0.1 -0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 +0.0 -0.5 +0.8 +0.3
growth on oleic acid YNB Oleic Acid +0.3 -0.0 -0.0 -0.1 -0.0
auxotrophy YNB Glucose +0.0 -0.1 +0.4 -0.3 +0.1
growth on ricinoleic acid YNB Glucose +0.4 -0.1 +0.1 -0.1 -0.2
growth on oleic acid YNB Glucose +0.2 -0.1 +0.0 +0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 +0.4 -0.3 +0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.0 +0.2 +0.5 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.1 +1.1 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.1 +0.8 -0.1 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.1 +1.1 -0.2 -0.2
growth on ypd YPD +0.1 -0.1 +1.0 +0.0 +0.4
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