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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12375 and 12376 are separated by 300 nucleotides
12376 and 12377 are separated by 400 nucleotides
12377 and 12378 are separated by 616 nucleotides
12378 and 12379 are separated by 384 nucleotides
mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432
12375
mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810
12376
mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922
12377
mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554
12378
mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704
12379
Group
Condition
mRNA
_4007
mRNA
_4008
mRNA
_4009
mRNA
_4010
mRNA
_4011
12375
12376
12377
12378
12379
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.5
-0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.9
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.5
-0.9
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-0.7
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-1.0
+0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-1.1
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
-0.7
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.0
+0.3
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.0
-0.5
+0.8
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.0
-0.1
-0.0
auxotrophy
YNB Glucose
+0.0
-0.1
+0.4
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.4
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.5
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
+1.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.8
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+1.1
-0.2
-0.2
growth on ypd
YPD
+0.1
-0.1
+1.0
+0.0
+0.4
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